Scaffold Ga0134121_10139396

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134121_10139396

Scaffold Ga0134121_10139396

Overview

Basic Information
Taxon OID	3300010401 Open in IMG/M
Scaffold ID	Ga0134121_10139396 Open in IMG/M
Source Dataset Name	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2060
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Kellog Biological Station, Michigan
Coordinates	Lat. (^o)	42.3938	Long. (^o)	-85.3708	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016747	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134121_101393962	F016747	GGAGG	MPRSVEAKKGQRFQDGTGLTVRVGDVDGTDRIHFSVIEDGKVSASGEMSHAAFVNRFSRIQTVEDSCERIKRLGYVAHGCVRIYGEEFELLSDPFPEFERIAIRARANGDSSIRVLRLPLTLVQSDRKQQEVKAA*

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