Scaffold Ga0136851_10059555

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136851_10059555

Scaffold Ga0136851_10059555

Overview

Basic Information
Taxon OID	3300010413 Open in IMG/M
Scaffold ID	Ga0136851_10059555 Open in IMG/M
Source Dataset Name	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Novogene Bioinformatics Technology Co., Ltd
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4129
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment → Mangrove Sediment Microbial Communities From Mai Po Nature Reserve Marshes In Hong Kong, China

Source Dataset Sampling Location
Location Name	Mai Po Marshes at Hong Kong
Coordinates	Lat. (^o)	22.0	Long. (^o)	114.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033874	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136851_100595551	F033874	GGAG	MLSTAATSMILVISMIGASAALPAGAADVVCSGHQLLAKPRPELSCTNLVPIIHVSPDGALHAAVLAVDVSLYATPDMESRVVIRTAKGDTLTSKSYASPRGTNGYYVVNAKWSPDSQFLVFSLTSSGGHSPWSFPLMVYGRKRNMIATFSDMIGGKPTLSPDFKFTGASTVAATTWKGPATAGSTSGPEPMSIQVDLAEAFAKLPASAN*

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