NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124850_1000084

Scaffold Ga0124850_1000084


Overview

Basic Information
Taxon OID3300010863 Open in IMG/M
Scaffold IDGa0124850_1000084 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12149
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004985Metagenome / Metatranscriptome416Y
F004998Metagenome / Metatranscriptome415Y
F091551Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0124850_100008414F091551N/AMTAIPPTTEPAALSAAAERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALDELGDA*
Ga0124850_100008420F004985GAGMKATIKKLRAVALICVATVLVAVAILRHVNNKQHAAWCCDHGYANYATKDGFCVGARGKLIKVGL*
Ga0124850_10000846F004998GGAGGMIGRILISLTAFALAGFLLLVLIGLWDGYEQETKALGFSGIYERYLASQAGFADDAKGYRAVVEAESAQTAVVAGTAAIEE*
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