NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126344_1390447

Scaffold Ga0126344_1390447


Overview

Basic Information
Taxon OID3300010866 Open in IMG/M
Scaffold IDGa0126344_1390447 Open in IMG/M
Source Dataset NameBoreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)601
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)63.883Long. (o)-145.733Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080102Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0126344_13904471F080102N/AAMASLAFAAPQKDSTPTYYLRGYYKLDNQRPTWQDSDSSPWSEVKRKTPWVNERLVKWGYVPFTHDAKNYYCLIDNGPRTGSHVKDVTFMCGDPDTAQWLFQNNWRPNVPLIGGGPPLESSLRSSKDN*
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