Scaffold Ga0126350_10734827

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126350_10734827

Scaffold Ga0126350_10734827

Overview

Basic Information
Taxon OID	3300010880 Open in IMG/M
Scaffold ID	Ga0126350_10734827 Open in IMG/M
Source Dataset Name	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1625
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil → Forest Soil Eukaryotic Communities From Alaska, Usa, For A Soil Warming Experiment In A Boreal Forest

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	63.883	Long. (^o)	-145.733	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034756	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126350_107348272	F034756	GGA	MKARTLVTHRVYFGMDPLSLRAAAARVFARVVGLPPERARVSARSLRQDFGIDDADAGQALIEELVSEGLLNPPNELQSDYGLSERFVEFAFARVVAPLPRERAKQLLTQACDLAARINAEWTRNPLEIEAIAPFGSYMTRDKQLSELALGVVVRQRPASRRARWGRVATKTDGARDIRVALRELSSFIHVRMVRDRDVLPRPFAVAFQDDASILLLDS*

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