Basic Information | |
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Taxon OID | 3300010883 Open in IMG/M |
Scaffold ID | Ga0133547_10081211 Open in IMG/M |
Source Dataset Name | western Arctic Ocean co-assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7317 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (64.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 190 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007052 | Metagenome / Metatranscriptome | 359 | Y |
F007771 | Metagenome / Metatranscriptome | 345 | Y |
F082825 | Metagenome / Metatranscriptome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0133547_1008121111 | F082825 | N/A | MVVGCSTSTMGCYGHWVKGPGQQRGTRALLKDAHLPYYQCVDENNKGNNLKERRYL* |
Ga0133547_100812113 | F007771 | N/A | MKTIIHAKSIDEKVRLALYGMLQHSATKLFPRRMKYVSIKLHLKHYVFDGVAMIEEDTRITNPRNFKIIIDPYRLEKDDWGRERNHSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSEEEYYCSPHEVEAYGKEKWLQLGYTATWNRIENGEI* |
Ga0133547_100812115 | F007052 | AGGAG | MENETYFVARLVKKGEFLSSEIFESLEEARLWAMREAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERVI* |
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