NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133547_10814078

Scaffold Ga0133547_10814078


Overview

Basic Information
Taxon OID3300010883 Open in IMG/M
Scaffold IDGa0133547_10814078 Open in IMG/M
Source Dataset Namewestern Arctic Ocean co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1832
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016497Metagenome / Metatranscriptome246N
F062240Metagenome131Y
F076876Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0133547_108140782F076876GGAMKKTNRFYAALITMTFGFPLISNVSAEDKNFLWESDGSLTIVDGAKDSGYIIEDGEVKTYVIPSDTEKTFIQDGPTGKLIVCDPSIGCY*
Ga0133547_108140783F062240N/AMTKDEKDKIMKQLLADAGYDYEPKPRNDGDEIWTPCGKDIPKEPKPISKETKDKLLKAKRSERLKGFLDDK*
Ga0133547_108140785F016497AGGAGMKTKKLEDKKLDEITVQDMMLTPMGCKIVAETAIKSLATQIGKWAEEYPDERENYQADIEVLWRTLWLFNKCDFLFKDPAPKNEDLAA*
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