Scaffold Ga0133913_10009120

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133913_10009120

Scaffold Ga0133913_10009120

Overview

Basic Information
Taxon OID	3300010885 Open in IMG/M
Scaffold ID	Ga0133913_10009120 Open in IMG/M
Source Dataset Name	northern Canada Lakes Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26030
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (57.45%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015057	Metagenome	257	Y
F064346	Metagenome	128	Y
F094831	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1000912010	F094831	N/A	MPYVPQQLRTESFIAGFADIYNMLADNPEMRMIPIDQLETVRPRLKQLGYRFRVVFRGPHRRNRGTLKRNARAFNVYFEGR*
Ga0133913_1000912047	F015057	N/A	WQTRMNPIKLLADGVDSLWLWTYGIIAGWGLTFTIIVVALVLVVIRTINLQRRVDRLENRLITAERDYNLTVNNWKSK*
Ga0133913_100091209	F064346	N/A	MFILKEDNMSQYRTPAEYREIVRTMPIQEVDGLFETFQNSTTRTAQETEIMDILEAEIERRIARWEVAYV*

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