NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_10075875

Scaffold Ga0133913_10075875


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_10075875 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9017
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037070Metagenome168Y
F082681Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0133913_100758752F037070N/AMNPMGTPFEKGSPTEQYPIQSSTTKPFFPPVCLNYHWDPTKIYRRSVPDSLISLPMGFRPYTKVCLEYRTSAAGQKAPEISDDMVFPQGGEVYPPDRYLRAVDKESLLRRLDRPLGTCDDKEYAPPQNGDMYVDRMLVPKSNKPPSRFVEEISMPSALLRAGTYGCRSEADEKNWLRSTRLFNNSTKQDRYMGATEPPRQNIWKDQRRCDAAGPSTDRLTPNGCRAWGC*
Ga0133913_100758754F082681GAGMIEWIVILLIIFCIIVSYYSQSNPEYSLSQIKESQIPLNLLTLWEEKKPVVVSEVHSRRIWSSDSLKQTRFWGAQPIWNQYEENPSGTIVPLQRSLKTTWSEILGIAQIENELLLKWFDVSPWIFSTRTESHIGYEGLRQSYGWATSIACSQGEARCILLHSAQKSRLPPGWKGLRWAHANVTHHPLWSQVKYIEVILRPGTTILIPPHWIVAIEPLDQESPIWWIRTDLHHLISKGVQQINEEV*
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