NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_10409834

Scaffold Ga0133913_10409834


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_10409834 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3582
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001937Metagenome / Metatranscriptome614Y
F003658Metagenome474Y

Sequences

Protein IDFamilyRBSSequence
Ga0133913_104098342F001937N/AMSSDLATIVYSYFFVTAALFAGIAMIAKHTIQKHTEELKDQLTKINYALYNDGKTGLINKVDQLIENQQQIKIDVEVMKAKAEA*
Ga0133913_104098347F003658GGAMYRTETGMTDDLRGEPAFACICGCMMFEITVMWDQETREPAWYDLAQKCKECGTITTAPTPIDWMDCD*

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