NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_10471369

Scaffold Ga0133913_10471369


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_10471369 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3312
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024484Metagenome / Metatranscriptome205Y
F029410Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0133913_104713691F024484AGGMLTKTNYTVDTSFFQEARNRLIHDKMKTTINQPTGNFFYDPWVLKDEYRGTVWETLYNSLPVIKGEARIIILDHNQCYQTHADIDDRYHLNIQGEACYLIDLVREQMFPLEQDGIWYNMNAGLLHTATNFGRCARVQLVVRHLLKKNELLDPVEIALSSTVSNTDDARFIFDNTLSPWLNHANKLGYINNFSYSPITVKFNIEKNKLDLFNSILPAEFSLL*
Ga0133913_104713694F029410AGGAMNHHNIDNCLVPFDHSWENIAISVSGGADSALLAYLICDLAKDHNVTIHIINHVRCWKTKPWQQDNANDVYNWLFQRFYHTKFVRHTNFIAPELEYGDVGPILTDEYGKKVSGDNIQQRAYAEFVCHKYDINAYYNAVTRNPIAVDLGGMEERNIDANDSNQHLKIMKHMDRWAIHPFRFVDKSWVISQYKRLEIIDLLELTRSCEGTFEEIDFTNYTKGQYVPVCGECFWCKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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