Scaffold Ga0133913_10577462

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133913_10577462

Scaffold Ga0133913_10577462

Overview

Basic Information
Taxon OID	3300010885 Open in IMG/M
Scaffold ID	Ga0133913_10577462 Open in IMG/M
Source Dataset Name	northern Canada Lakes Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2954
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_105774622	F029049	GAGG	MALLDMSRVVKVILDRSQEITAHRVGLERTIVRNAEVNDASNFGQVYRNWHELVWQEAEAAAAEMAVANYYGDFGFTPAIDNAHDTADVGDNIEVKFTKHANGHLIIQNRGPGRPNDVAVLVSGLSPVYLILGWMPISMAKQAKYKHPYQNNYWVPRSNLFEMQYLKRSNYGS*
Ga0133913_105774623	F030767	GAGG	MALKTNCRICKRITEHVERIVTDNLPEYVKTLECLKCGVMGVVLMEYVKDA*

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