NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0133913_11198943

Scaffold Ga0133913_11198943


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_11198943 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1947
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F004010Metagenome / Metatranscriptome457Y
F060859Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0133913_111989431F060859AGGAGMKLWTNNTNAIHKVDDNLLHVRNTYVIPDELTGGIWTESIPCPHKIKPYYKGRSTGGATAVYRAGAIGDAVIATAFVNYLVQESGGVVDVYAPARNLPLYAGLGAKLYPLPCTLEAWDSYDS
Ga0133913_111989433F002826N/AMHTEAKARLKWGRDILLSAREKLVVERDRASHGRAIDMIQIITMVDAAALICKEIIEEQ*
Ga0133913_111989434F004010AGGAGMLGKDVSKNMHELAMDNKKKGKARGAGGVPRSHKQMVAIALSAAGKSKPRKFRMRSGS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.