NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_11343674

Scaffold Ga0133913_11343674


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_11343674 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1822
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F014140Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0133913_113436742F014140N/AMNTYIVKMSVELEVQAFNETDARDYIGDIFNTDDEIKNIDILKIKQK*
Ga0133913_113436746F000473AGGMVSSSFQDNNHFKHGINLWNGEPHKPVFYTVEMAKKVREIPKPALLLMDIAGYPDFLAIRLYEDNFTQFDGSSKERVIDYVGKVKKLIESYGVRCELEGVPSERIL*
Ga0133913_113436748F000671GAGGMEKILCYCCGQTKHKLNVKKSGLLPINLLMCETCINGKLEPRWVIILSGRSFGSDYVKDFIIKRRYSGNEISASELLV*
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