NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138113_149562

Scaffold Ga0138113_149562


Overview

Basic Information
Taxon OID3300010895 Open in IMG/M
Scaffold IDGa0138113_149562 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1475
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003391Metagenome / Metatranscriptome489N

Sequences

Protein IDFamilyRBSSequence
Ga0138113_1495622F003391N/ALHPNWGIGRDKPTGNTKGVKKMRKIRKITRDKKGIDTILAALLMVVIVVVAAVMVYAWSTGLLSALLVQNPVPKESMNFENFAFNANNMNLTLNVRNTGSVAIAFASYYVKDSNGNQYARLSWPTDSAGKYPASVNPNGLVSVNIAISTACGSSCTGATYQFSSGLSYTVTVVTTRNNQFVWTGSR*
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