Scaffold Ga0137843_1143689

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137843_1143689

Scaffold Ga0137843_1143689

Overview

Basic Information
Taxon OID	3300010932 Open in IMG/M
Scaffold ID	Ga0137843_1143689 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV7-P1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Hellenic Centre for Marine Research (HCMR)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	796
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location
Location Name	Santorini, Greece
Coordinates	Lat. (^o)	36.45421	Long. (^o)	25.40539	Alt. (m)		Depth (m)	229
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048198	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137843_11436891	F048198	N/A	DRESSGPWLPSRLCXPAGSLLTMATSAPLXATRRLMXYSAKLQDQPASPRGSPIYSVSPFTPCRRPYSGGANDCLRRCLHRWXCLRHFRTGSATTSPTIPDRVGRVTKLQRSLNATAWRCCKPCSGQDLYHRAFMGRVTPKAHVNYNWMAHRHLPSPDFHRLD*

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