NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137844_1200819

Scaffold Ga0137844_1200819


Overview

Basic Information
Taxon OID3300010934 Open in IMG/M
Scaffold IDGa0137844_1200819 Open in IMG/M
Source Dataset NameMicrobial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHellenic Centre for Marine Research (HCMR)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool Microbial Mat → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location
Location NameSantorini, Greece
CoordinatesLat. (o)36.4542567Long. (o)25.40523Alt. (m)Depth (m)229
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002980Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0137844_12008191F002980AGGAGMKKLLSLLILTGTLFAQANDIFTLNPSVNSSAMGNVGIAHADVKNIFHNPAFAGLNKRYQEISYVDWLPNLTDDMGYQNIXYTSSLGWSSEXFYFDYGNQIEADINGLVLGDFDSSSYRISGGYGFGIKDWLFGARVNIYNHNFIDDIDIKMNYGFDLGVYKEFGNTSLGIVLKDVGGETDXLDQSLNLPMSVGIGVGQKFGNFTLASDVKVFEDYNSIGLGGQYDLGIASFKLGYYTESEFEVDYITLGGSIDAGIVDLSLAYYYNTDSFHNETLMISFGFDL*
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