NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137784_1287716

Scaffold Ga0137784_1287716


Overview

Basic Information
Taxon OID3300010936 Open in IMG/M
Scaffold IDGa0137784_1287716 Open in IMG/M
Source Dataset NameMarine microbial communities from surface seawater of North Pacific Subtropical Gyre ? Stn. ALOHA, 15m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1556
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Surface Seawater Of North Pacific Subtropical Gyre - Stn. Aloha, 15M

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045809Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0137784_12877161F045809N/ANADPEIIAAIRGLRKSIDVPTAPQVTIGNASDKTKFFPDGDTFTGVASSTLGDITVYCYFNEPVHITGTPQLQLKQATALGSTFGTIMDFNSTVSVLSEGIVAFSLPASTDTRTSNVTNNTLGIKADDEISLNSGTIQKLNNERIILESGVANDQVYLKLDGTDSSSRDNNGFVVHEGGVGMPADLALSIDSNATMTVS*
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