NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137776_1304297

Scaffold Ga0137776_1304297


Overview

Basic Information
Taxon OID3300010937 Open in IMG/M
Scaffold IDGa0137776_1304297 Open in IMG/M
Source Dataset NameFumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3373
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Dco-Ecs Fumarole Sampling, Azores 2015

Source Dataset Sampling Location
Location NameFurnas, Sao Miguel
CoordinatesLat. (o)37.772747Long. (o)-25.304072Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031189Metagenome / Metatranscriptome183Y
F092637Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0137776_13042975F092637GGTGGMLLIATICAGAVVLLMTGAMVWLGIKALSTPRDRAAGNQMLQMTAALLGERFVERQEYPWYRRPAQYGAIDGELDGLKYMLMLMPWNAEDCGGAAMLAIRLPEGSPLAGKGGPGLTVFTPESIWHWPDRADPGALATYAREAIAAAVSGVMPPHTS*
Ga0137776_13042977F031189N/APPSDTLHGFGAPMRYLQTACGAPQHPGGAHWFPDTITVIVPFNRPAP*
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