NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137716_10079845

Scaffold Ga0137716_10079845


Overview

Basic Information
Taxon OID3300010938 Open in IMG/M
Scaffold IDGa0137716_10079845 Open in IMG/M
Source Dataset NameSediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2709
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment → Sediment Core Sample Microbial Community From Chocolate Pots Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameChocolate Pots hot springs, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7101Long. (o)-110.7413Alt. (m)Depth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026391Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0137716_100798453F026391AGGAGMHAKRRDVLMRVGMLLGGVTLLVGLLWALSGSGHNPNHGINMEKAREAADRVKPPPPPGTKRIPGHGG*
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