NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138308_107888

Scaffold Ga0138308_107888


Overview

Basic Information
Taxon OID3300010965 Open in IMG/M
Scaffold IDGa0138308_107888 Open in IMG/M
Source Dataset NameMicrobial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7060
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location
Location NameLake Cadagno, Switzerland
CoordinatesLat. (o)46.5499Long. (o)8.711Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006844Metagenome / Metatranscriptome363Y
F009531Metagenome / Metatranscriptome316Y
F034575Metagenome / Metatranscriptome174N
F035304Metagenome / Metatranscriptome172Y
F070104Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0138308_10788810F034575GGAGGMNPTNLDPYLMKQVEMGMDGADILHGHLKTLMLEAEQILDRCIEVEDESGEAMDSMARTEATGYLDALAEVYSLTYAIAFAKEDVKNRREILGG*
Ga0138308_10788814F006844N/AMAKWEIEVIFEPTGDYMNFIYETDNEDEDTIFNEVSNQLSIVPNLVEKNEEE*
Ga0138308_1078884F009531N/AMTKQVAIYEMNYSCSPGGVDCWEATINGYGTSSTASDFKTAGEALNWVLDRHPDEMLELTVVSLPAYEKEFV*
Ga0138308_1078886F070104GGAMLGYNEKDIAIMTDAIEDAIKSGRLADEITDGLEKARDFLDGLWAEGYFD*
Ga0138308_1078889F035304N/AMDLNTFREYIRLHAISLEQDLQNEDGADSIVPYLEGAIHVSKHYLEVLNESN*
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