NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138308_108266

Scaffold Ga0138308_108266


Overview

Basic Information
Taxon OID3300010965 Open in IMG/M
Scaffold IDGa0138308_108266 Open in IMG/M
Source Dataset NameMicrobial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6819
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location
Location NameLake Cadagno, Switzerland
CoordinatesLat. (o)46.5499Long. (o)8.711Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F001460Metagenome / Metatranscriptome690Y
F003422Metagenome / Metatranscriptome487Y
F017829Metagenome / Metatranscriptome238Y
F023344Metagenome / Metatranscriptome210Y
F047059Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0138308_1082661F000441AGGAMSDRYVNDQLNKAQKLLWSGSLHEQDEAHNIIAKLIKDREDLIENS*
Ga0138308_10826610F001125GGCGGMGDRANFGFTDSKGDTLYLYGHWAGYEMLANLASAVEAARPRWTDESYATRICVSQLIGAQWPQETGWGLSINRLGDNEHKVPVINWQARTFTLYEEDLTTEVFHTSLDAFVSKYSQPVMV*
Ga0138308_10826612F001043AGGAGMSDYKDGFQDGYKFAREEIMEKLAEIDIADIDSWILDRLSEMIEGNQL*
Ga0138308_10826614F003422N/AMTNELISSKYTFICDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSTQTKEEKMETTTIGSDAFHSPAVEYNPDLLVTYKVIHGYSDPEYTTSKVTSLEWDLHNGRQAQKTSNMLQSNVHRVKDIITEAYADSLDQDTLREIAEALGIELTKEIEWSATIEVSGTFTVDLLEDVDADFESELYDNLYVESQNGNIEIVDTEVTNVREN*
Ga0138308_10826617F017829AGGMANRFRIEIYDANKANDVTIYSEQGIDKEYLTELVFSNIKNFNGKVSAYVYDSLKKKKTTAMFLNEDTVAFAKSKSPALTKSI*
Ga0138308_1082663F000263AGGMDMTTEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGYLDALVALYELTYQLSFAIGARTL*
Ga0138308_1082664F047059AGGMEYMKLHLISLNQDLEDARNNIPIPEDEYFESDAYYTGAIDTMEHILSVASDIMIDNERVY*
Ga0138308_1082665F001460GGAGGMLGYDKKDLDTMINSVHDAKLFYLRSPSDLMDKTQLRTDLEMTVSFLQGLWAEGYFD*
Ga0138308_1082667F023344AGGCGGMEAFTDTVGEHILGAIQVDIEQALFEDWNQSNLDEGEAYAEYRFMQFAPDNLKQSYNEYYGYIEGDEYCL*
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