NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138308_131910

Scaffold Ga0138308_131910


Overview

Basic Information
Taxon OID3300010965 Open in IMG/M
Scaffold IDGa0138308_131910 Open in IMG/M
Source Dataset NameMicrobial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2379
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location
Location NameLake Cadagno, Switzerland
CoordinatesLat. (o)46.5499Long. (o)8.711Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030094Metagenome / Metatranscriptome186Y
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0138308_1319101F093864GGAMYEYTVEFVLEAMVIITSVSFEVPPFLDEVIIEEARQHLINSYKIDPEVLYLQDVIVHEV
Ga0138308_1319102F030094AGGAMKLRGIFEGTFESVWSMDVPQAEWDKYLEQNPGIDETDSDDIQTMWDYFKSIGCYDEIDDTVDTNVVMTGIETYGVDVDVND*

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