NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137675_1000005

Scaffold Ga0137675_1000005


Overview

Basic Information
Taxon OID3300010966 Open in IMG/M
Scaffold IDGa0137675_1000005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFASTERIS
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42252
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (84.72%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F005087Metagenome / Metatranscriptome412Y
F012214Metagenome282Y
F058809Metagenome134N
F103134Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0137675_100000510F058809N/AVFDPLTIGLAFKAMQAAYDGISYCCEALSEGKVAIQKVKKATDDIKTITNDAKTIWGFFSGLFGGKAKPLPTAEAKPVVKKKEQYTTHVPNESEIVQQFIGHLGAFFRHHKELTEYVEIKYEEVFASADPDPETILELSVYKNELDQSYVKLSGMMRGAGVPSQLGPLWENYNQIYSKVQAEQQKRKEQIRIRRQIEAYKRERFRQEKVELSMGLFLVLIIVSWLYAVWINSFTEGFSY*
Ga0137675_100000520F012214GGAMSDSYTPVRTPFTQMSFTPDVPSNALSANEYNSGLNVECDVRGIRKVAGEQEILGTITGNVIFLDGGFRGTEWTYIAATREGKWYKITSAGVSNITPGVGANPSVALSGYTDDTNITTSWVGSVFFINDSLRPPMYFLASATEIYIYDSAPDYYVWNYEASIGVTAVTAAFVRNYSSPNVGNILVAGNLTKTSGGITTNYPTTIRWSQAFANTGVPATWSPTLNNVANEQEIPVRGPIIDGFFLGANFYLCSYWDTVVMSPIAYQNSTAPVFGIRLFNQGRGLIHNNCWCNTDSEVYGVDSRDIWVFDGSNFASLGNQKVKNYFFANLNQTYADRMFMVNNTQKNQVELYYPDLTSTGWCNKMLSWRYDLKLWNAPRDVANACMATETPVYSGSAFNYASRTVAYARGNVSGSKIRQTNITNGFAGSAIPALFERTNATLQTAEGPVPYSAKVYVHRILPEVVGTGTINITVGGANSAAQTPLYGQKATVSIVTDNPWVTTQQNTVRTMAVKVESNDATDTWNVPALNWQATITEDAY*
Ga0137675_100000526F005087AGGAMALFIQSANSLVSRVAQWVGAIPSSIGINATAYNSSSGVITTSADPTSLLIVGDFIGNTAIGPYTPVIAISSTTITVSDPDSVWNGATYPTAILKLPTQSSLEVLQCIQLCELKLRTAELPALRSNPYPEDGDFITTDSNGMGPIPRDMNWPILFFQDTPNNQVEPGTPAASYGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGQKYVFTPNPGANVKIKAYYQRIFPFLYSATGDVLNPLVQNNAALASFPEGYLYGTLEAYYDKNKNTTEAQKWAVRFEEAYGLIEDQNFKDKWRGGDQHLTSEFQPRDYRYSFR*
Ga0137675_100000527F000857GGAMELNLNNEEAKVNEDYYTKGNLEAGIEGVLRRNDQLYNEVKSGTWSQTFKTKNLDYKIGAEDGARYVQYTQHNVEAIKQYCKERREFYQTIGTTDNPFFAGTFEAMNLPKSIAHAICSKYFNNRPWELVKTEKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0137675_100000530F003521AGGAMKSLVKNIRGYFNRRTKAVDSYKEAHVERRTLVIQNGEAASRLMLNEDFALMFNLYRFSMLERLEEADSDEKRIGNAYYVAGVRDFIDFVEKSEYLAKVALKKVET*
Ga0137675_100000531F004695AGGAMLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRMSDYHYLNIPVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPNGKINFEFERFSEADEPGSRQAAKMALHFLNSKNDSYQFVRDWAQDALLHKSGVVMVSPVREQITQYKEVEGTKDNLRSFEIMAAEKGLSAKRQQMRRIDVDMEGVVQETMMPDETGMPSEPTTEEMNDAIKAHTIYRAKYKLTGYSTNIQVKHVAQHYFVCNPTIPGIRKQDFCGFYDPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRRDIDNDGEEEIIEVCYSGSYILYIKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFIDAEEIQRGVSALFVLDRKFDPTKHIYEFQAMEGNLAYVQDAMQRFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKDLIYIVWKTMIQYSDDYNMQQLAEAMLPGAGFLDAKSMENFDFIDRNMINIDLALGFLSDENRLTRQQLITQAQAQFAALVAQLDPSVPELFQKVRRPFEDTLYALGVKNCDSYLPTLEEAARMIQSQASKGPSTAEQEVQSKVGLNQAKTKESETVSALNIKKAEDIDMDNFFEMQAMKAGKLSAVQVD*
Ga0137675_100000534F001059AGGAMATYDIEALKADLPTAKELAQFVFDKTNGAISLDLIGKPKDDQYQVAKNALEGKKVPSEFLTGENPYMDKKDEIPEDPLRVMPPRDPNLPDPDAQVHFFGATNMPHPLDPQSDKKVYIEFRKYENGLITYTITGPIEQVPVGEKKNRYGQTVPEKYTWIDPRTPELVMRNADGTFTKEGRGLHTYCVGEKGSGIWSMIDRDMVTVTAKNIANPWA*
Ga0137675_100000536F103134GAGGMSGYGKVINGGKQMSKGNANHINNKLSGFDGENKRREMVAGAVRQAFTVRHLSDQTTNNVSAGGKFKTVKEKDKVQPL*
Ga0137675_100000539F001915AGGAMEWSLADPRFDVEDMVELSDSFFGAEADGIVSRSRAVFRHRLTVACTEQLFNKSREFIAVKRDDSGKLQGFCWFDRGGYTTYSNDEISNAKMHHLDLSLPAKTRIRLVNEMIDQHILWAHTWGVPVVCSTSIRADHDVFMKIHAKRGFTVNGSYAWIRTEKGLECLKSSS*
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