Scaffold Ga0137675

Basic Information
Taxon OID	3300010966 Open in IMG/M
Scaffold ID	Ga0137675_1000054 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	FASTERIS
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

FASTERIS

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10697
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (85.19%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

10697

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (85.19%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location Name	Jussy, Geneva, SWITZERLAND
Coordinates	Lat. (^o)	46.25	Long. (^o)	6.28	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Jussy, Geneva, SWITZERLAND

Coordinates

Lat. (^o)

46.25

Long. (^o)

6.28

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002935	Metagenome	519	Y
F006385	Metagenome / Metatranscriptome	374	Y
F007691	Metagenome / Metatranscriptome	346	Y
F011487	Metagenome / Metatranscriptome	290	Y
F021757	Metagenome	217	Y
F038479	Metagenome / Metatranscriptome	166	Y
F045756	Metagenome	152	Y
F048982	Metagenome / Metatranscriptome	147	Y
F081245	Metagenome / Metatranscriptome	114	Y
F083720	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_10000541	F038479	AGGTGG	MTTLNTYKGLSLDQKITIAAQMVADGKLVSFRGASADTYIKVQKLANKIKQD
Ga0137675_100005410	F021757	AGGTGG	MMTRKDYVAVAEILSSYKELIGDEFTYHDLVDDFGSMFEADNPNFKFEVFREACEK*
Ga0137675_100005411	F006385	GAGG	MILDTGTLIGITIALSGSVGMMVAFWNRTIQLEKEIRRLQVALRTERIKK*
Ga0137675_100005412	F083720	N/A	VGTNYHSRTLQGEIVSAEPHPHAVWYEGCDTYLVEVAPNSGYNNFGKRTYRTIAVKVGA*
Ga0137675_100005413	F000447	AGG	MGYVEIFRIDNEGAGWIDLAQANEDEKFNIELGLLNEGALFTTKEAN*
Ga0137675_100005418	F011487	AGGAG	MANMYEAISDEFYDEYYSTVCPSCKENSVDEYEEKCTHCLLEEMSAMYNEDIALEMSLGLDY*
Ga0137675_100005424	F002935	AGGA	MRNRSKGYIGQIVDGKKLAVIANGIYNLQYSSDFSECTVDNLLFITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVETIKECLTDQTEDISDYIRVFGDRLDNNCSLWQSKMSVVEDMIVI*
Ga0137675_100005426	F007691	GAG	MNTIDDLINEIYEDNYSHLEFDANMGGEDCDCHIHITLNTMAKYAGIEVG*
Ga0137675_10000543	F081245	N/A	MGYVKSLELEYYLADEPEDSLATMLDELIKKGEYK*
Ga0137675_10000546	F045756	AGGAG	MTKYNVIVSYVCEAENELSAVFALNKTLMPLSENELEKFNAFHIEEIVE*
Ga0137675_10000547	F048982	AGGAG	MSIELRDVLSMSRQIRGNDYDSGTHYFLGYLWACTPDEEKMRIAKVFANDLAELGKDNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137675_1000054

Overview

Ecosystem & Geography

Associated Families

Sequences