Basic Information | |
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Taxon OID | 3300010966 Open in IMG/M |
Scaffold ID | Ga0137675_1000156 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | FASTERIS |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6113 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (94.74%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland |
Source Dataset Sampling Location | ||||||||
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Location Name | Jussy, Geneva, SWITZERLAND | |||||||
Coordinates | Lat. (o) | 46.25 | Long. (o) | 6.28 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001781 | Metagenome / Metatranscriptome | 635 | Y |
F020910 | Metagenome / Metatranscriptome | 221 | Y |
F061860 | Metagenome / Metatranscriptome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0137675_100015611 | F001781 | AGG | VKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTIDNILKDESWSPQITQDEMWGHLCEAVEAGQGFSLEYGAEQHQEEVLEWMMNRGYILDPVYED* |
Ga0137675_100015614 | F061860 | GAGG | MNNLTLEPRLQALIDMGEPGTDILHGELKNMMYECEKVLVPLLDNSNEVGSDEDYEDTVQRLYNEGYMDALTAVYQLTYELAFAIADRRENGNA* |
Ga0137675_100015617 | F020910 | AGG | MWTRYTFVCDPDECDALLEFTARDGYGFPNGIVSMRCPCGRTMQYIDVEDLPERIPEPVMDITYTEVVKINTNPYN* |
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