NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137675_1000292

Scaffold Ga0137675_1000292


Overview

Basic Information
Taxon OID3300010966 Open in IMG/M
Scaffold IDGa0137675_1000292 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFASTERIS
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4048
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location NameJussy, Geneva, SWITZERLAND
CoordinatesLat. (o)46.25Long. (o)6.28Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014737Metagenome / Metatranscriptome260Y
F023109Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0137675_10002923F014737GAGMTTINAVTGYQINHAEFVRLTVGTAATVYTFCNAAAPITVSGITFTNLGALLNVGDVQRDIKATSDDMTIALTGIDSANIALILSSDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNSEARTRIATCSISCSSMRRILENRLSGVKTNQSNWQFIYSGDTSMNRVSEISNTFFDFGSPPKTQTQASETTVTTENTAAKEIP*
Ga0137675_10002924F023109N/AMIRQATRYDIPRLLEIVEAYAYENPIKKLGQSHNHFPRYVEELLFSIIQGRGFIYVDTHLRGAIIAYKTSNIWSPKVKELNELLWWVEPEYRNGTVGGRLWKAFDERAQDMLKMGDIDIVCTSISASGPLIDYTRRGYKPLGATFVRE*

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