Scaffold Ga0137575_10000225

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137575_10000225

Scaffold Ga0137575_10000225

Overview

Basic Information
Taxon OID	3300010970 Open in IMG/M
Scaffold ID	Ga0137575_10000225 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	FASTERIS
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11938
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location
Location Name	Jussy, Geneva, SWITZERLAND
Coordinates	Lat. (^o)	46.25	Long. (^o)	6.28	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F029096	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137575_1000022518	F029096	AGGA	MANTRTTMTIRPDLTDYRGLLKALNQMDKEAQYALKEDVYSISAWTAQGIKQAGYAHPFYPKQAAIAAATVRPARDRVPTVYVGGSKGRASGGANAGQILFGNEFGGDRNAFGNRSAFPNGGYRFPPRTSREGRGNTGYWIFPTLKAMQPEIKRRWFAACNKVMDNWARNS*
Ga0137575_1000022519	F009265	AGG	MQYTITTKQGNNYIVSDDSAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKSAGHTKMPSQQAWVTNEFETFEVVEENPKEN*

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