Basic Information | |
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Taxon OID | 3300011003 Open in IMG/M |
Scaffold ID | Ga0138514_100024110 Open in IMG/M |
Source Dataset Name | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Shell Corporation |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1112 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Ranch near Red Deer, Alberta, Canada | |||||||
Coordinates | Lat. (o) | 52.172047 | Long. (o) | -113.738964 | Alt. (m) | Depth (m) | .15 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F062960 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0138514_1000241102 | F062960 | GGAGG | MKLADSWPLVVPAAVPSGHLYDESEEYDELDESKDGCGGVEWGCYVLNKSRTSYTMLLELARDVKGVEKKRGKQLTVTQYKRIFTKWENASRPFLRPHTDYFAKFLAKLNIVTMPKGETLRTAFERAKGRRPLPKVLLVSKELQLLASLCQELQERWPVTSLSCCAKHTLQNCSLFHSKRSPSGFAH* |
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