NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138514_100155071

Scaffold Ga0138514_100155071


Overview

Basic Information
Taxon OID3300011003 Open in IMG/M
Scaffold IDGa0138514_100155071 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)510
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameRanch near Red Deer, Alberta, Canada
CoordinatesLat. (o)52.172047Long. (o)-113.738964Alt. (m)Depth (m).15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011906Metagenome / Metatranscriptome286N

Sequences

Protein IDFamilyRBSSequence
Ga0138514_1001550712F011906N/AGSDSAREVYPPLFEALNWAHSLWDTWFRLVEPQDRHLDALRYVRDRCHHQLAAAIYADPAAPGGWRWYGSVHLPPEDVGRGHDREGAKNYSELLEQRPVLETLEIVERHFRSIVPDHEL*
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