NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1000066

Scaffold Ga0139557_1000066


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1000066 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30579
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011226Metagenome / Metatranscriptome293Y
F034850Metagenome173Y
F041184Metagenome / Metatranscriptome160N
F052371Metagenome142Y
F091307Metagenome107N
F093533Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0139557_100006617F041184N/AMASDFRPGTLDIQIWRNDTWQQVFTLLADTTPINLSGATVYIQVRKGCGGTLALTLTNGSGVTIGGASNNQITVNKLVNIEKGNYVYDLQVTFSDTTVKTYLEGDFIVYDDVTKP*
Ga0139557_100006621F011226N/AMAKQIIPVDIWVNGESKTAEFLQVTCINDNYESSATNYWQLFTKVVDAKGVESQGEQVAQGNLTIDGADYIAWGDQPAMAINAWIYNWSADKLNLVILP*
Ga0139557_100006628F034850AGGMEEDLILGKEEEVECFEEEIGHSFPEYISCSVEVLTMLETANPMTREEVEKTQELKKLCMEMLEFSVKSMHGMLFTNDI*
Ga0139557_100006632F091307N/AMKKQVTTNVRIPADWLKVSINDIMIMVTATINDVEDYIDVQVREIHMPGYHCLNILPQYYLSFYELVEQKCIDAFTFKMDSEYDHEYYCDYAL*
Ga0139557_100006633F093533N/AMHYERIEMTLSVKGEVRATAYPLRNHESIERQRKQWYFFYGLKSIMEWEIYISYTSKMQNSSPFKIEKSFPYITKSQHNDTTESRPTDLYCEPVNLAGGLIQTVGKRQSQVL*
Ga0139557_100006639F052371N/ALTNSEELDLERFKLSRTSLPISLLSGALVVDELINGMQKLGVKGDKMPTNADLLIMYKSIMEEYPNIKIGELSLAFDLAAKGKLDIDAETYQNFSMLYLHRILRAFARYGMQKLNEIKPAEDKKWNPRFVTDDEKIETAFDCYKKFRIWDSIIFGVDVFHILHKQGRIIVDAENTYDKVLRSMNDRMFDGSSQDKIDIKNKMKDDDYMENQCKRMAVADYFDKLIK*

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