NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1000693

Scaffold Ga0139557_1000693


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1000693 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8007
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (59.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015467Metagenome254Y
F023588Metagenome209N
F032578Metagenome179N
F048305Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0139557_100069313F032578N/AMIDPIEGRAYDVNSEDILALNYIKTQIQSLDHERRNEYATLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYTKAGEALGHLNAAQAELFAQICYGITVDQVTIQYIPEQNTFRVQEVRQ*
Ga0139557_100069318F015467GGAMRRITATIVTTITLIIGIGSAQAAQAPKPTHSPSTTRSEVIPKERQPTIKFRHGDISWLPQLAAEAGWPPHTWKRLGQIILRESGGCPNRRGGDIVNKNCEVIGHDGSNHRSDTSLLQINGVNYNPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFRVTGSDWSPWIVPEGGW*
Ga0139557_100069319F023588N/AVSNPMVLVTWADAHSGVATWTPIDSLDKDEMIVYTCGFLLATCDGGKPDHITVYQSRTQDDDIDHVLHIPSAMVRKIAICTPDQLG*
Ga0139557_10006939F048305GAGMGISDYDMTIKNHQFRIAELIYETAQQQLLHRKAQIQIAEFGIEIARLNSHIQVLETTLAAMSGELHALRMDTQ*
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