Scaffold Ga0139557_1001185

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0139557_1001185

Scaffold Ga0139557_1001185

Overview

Basic Information
Taxon OID	3300011010 Open in IMG/M
Scaffold ID	Ga0139557_1001185 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6059
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	41.825	Long. (^o)	-82.975	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007861	Metagenome / Metatranscriptome	343	Y
F017109	Metagenome / Metatranscriptome	242	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_10011851	F007861	N/A	SLEEVKRGEQATQILDNPLYKEAMDKVRESLIASMANSPLGDEKTHNKLVIALQLLNQINKQLTDVMTTGKLAAIQTDKPRFKVFG*
Ga0139557_10011857	F017109	AGG	LQKHCKGILTREWDGKSIPVVVGNLQGADKIQIACREQNIPYILIDHGYFHRSPDLEWARLCVNNYHCTDWRVSDRETPKVHEYRSGENVVVLPPPEKIAYIYQTSNWLDRTVEEIRKHTERKIVIKRKGEGDFKQTLEKAHVIVSFGSVADVEALIRGVPVIGSPYSPANPVSNNIKDIENLTYFDRTAWLSSLAASEWHKDEMDKCWDRLKGQLDGVY*

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