NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1002711

Scaffold Ga0139557_1002711


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1002711 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3929
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F050981Metagenome / Metatranscriptome144N
F078382Metagenome / Metatranscriptome116N
F083886Metagenome / Metatranscriptome112N
F100656Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0139557_10027114F078382N/AMRQTLDLLVVVLSIFLSRTLWVTIGGLYVVWIVHWSDVATLYTLDNAAQIQSFTQLALCRYGLIGSIVLGYLGFTRGSTGVAGYVIDQLNPKDK*
Ga0139557_10027115F050981GGAGMRWLAIIWLSASSVCAQITDDELSKISKEEIVLTIKHLRALTADAIATADRAIASEARVQASLTSATDALMHSQSQLLKVDQDIRNLQAQTEEQTRIAVGAKADAVKAQRLADHRGNLLGWLGAGLLCMLCLKLTSILPPPYGFLLPVAAIPAGYWLARLLL*
Ga0139557_10027116F100656N/AMTTLKNSLILLALCMLCACQTPRPKPLPAVVSIAQVKATTASASVAVRSAIDSSKSTTSEIKRIRTTQDRVDAKSVLILKWLEFQR*
Ga0139557_10027117F083886N/AMLRNEIFGDLWRGSVGIAGSWVAVISSMHEDIDSIAKTAGMILGCLASLAMFISLCQRIYHNWQTRKWEGVIFKQTDDDLKK*
Ga0139557_10027118F022372N/AMSTTITINVAFLTEEQRDAATLLFARSGGWQATVDGEPNPVSAEDYGVTMLANYLRSGVASQSAYDAQIVAAQEVADLLEGVTVTTPV*
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