NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1008954

Scaffold Ga0139557_1008954


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1008954 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2001
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F001538Metagenome / Metatranscriptome674Y
F002099Metagenome / Metatranscriptome593Y

Sequences

Protein IDFamilyRBSSequence
Ga0139557_10089541F002099N/AGQDLCSVRGFYSIAWGIHDPTERHRQMVEWLTKHQTLCKSTDFIVIWNNLAEWAGNSDSHELRALVISGYKNAIKREKK*
Ga0139557_10089542F001538GGAGMIDTIKLFPSVQPSGYPDRRDLAQARLEKQHEMNKANELAKQKQTQLQDIGFEIYTKKVVQERLRMEIFQNRKLDILV*
Ga0139557_10089546F000166AGGMSNIPTPEDSALFAQSVRKWQQVLNLGDWRIEKGLKPAKNAMASVEFNEGARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEIE
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