NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1023727

Scaffold Ga0139557_1023727


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1023727 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001125Metagenome / Metatranscriptome769Y
F002207Metagenome / Metatranscriptome583Y

Sequences

Protein IDFamilyRBSSequence
Ga0139557_10237271F002207AGGAMPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETYGMGDINANGFPTKIKEVTYSNPVFAFFNIHSYKDEGITDEEYACQPDRSGLNLDDPDWFRKSVEFAKTQKDWYSWNHSNWGTKWDVAVSDDEKYPNTELLEYKSEGDDNWLVYK
Ga0139557_10237272F001125N/AENIIFLYGHWAGHRMLEQLADAVAAAEPRWQDESYATRIAISNLIKDEWASETGWGIYVNQLGDNEHKVPIIDWKNKTFTLMEEDLETVVFSTSLEAFVAKYCSQLSMV*
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