NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139556_1001934

Scaffold Ga0139556_1001934


Overview

Basic Information
Taxon OID3300011011 Open in IMG/M
Scaffold IDGa0139556_1001934 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3137
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007203Metagenome / Metatranscriptome356Y
F086804Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0139556_10019341F086804AGGMATAPVYYSDQLVKEFIDKEFAGKTGDALYQAVANEAVNRGVSAEQLGRVLGFDTSAVNQYATNIGKPLVAEAKVLDTVIDNAYNQQFGRDATTAEKANAITYLTTGGNSLAGTGALNYSTEGYNYDTQSIISGYRSTLGRNPTQTEYVSAMANLGYDPFNPSVLGTAGKLSANVAALESDPFGGRYANVNPYGTYDL
Ga0139556_10019343F007203N/AMDCLMYVSMQGVNLAPKVKELEKRIEMLENMVKELQLDKPRMGRPPKDKHGTERVNVDNPSRD*
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