NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0150979_1090418

Scaffold Ga0150979_1090418


Overview

Basic Information
Taxon OID3300011012 Open in IMG/M
Scaffold IDGa0150979_1090418 Open in IMG/M
Source Dataset NameMarine surface microbial communities from Baltic Sea. Combined Assembly of 24 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBerlin Center for Genomics in Biodiversity Research (BeGenDiv)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1166
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Surface Microbial Communities From Baltic Sea - Bioacid_Cyano

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.32Long. (o)20.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004838Metagenome / Metatranscriptome421Y
F041159Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0150979_10904181F041159N/AMSQVGKLGYVDSKLGAPTSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTDGQTNLT
Ga0150979_10904182F004838N/AMALSAQDKILYVANKLGLSTLGNMQGSTGAVYDVDTDLSGQIFSSASRHQNPGTTNVTENQFEVNEALLVETIGFFTKRTNGEARNFQAEYGSNAVIVFDLIIGNKRVMKDTPVFAAGSPYTFANVANTVANIGETPTTIFLPRHQVYMEGAGILIPPQAQWYVEYRVFDVVTGATITPTDNTALGCYLFGTRVLLNFNTSI*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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