NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114934_10084484

Scaffold Ga0114934_10084484


Overview

Basic Information
Taxon OID3300011013 Open in IMG/M
Scaffold IDGa0114934_10084484 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → Candidatus Gastranaerophilales → unclassified Candidatus Gastranaerophilales → Candidatus Gastranaerophilales bacterium HUM_18(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5275Long. (o)25.4914Alt. (m)Depth (m)482
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026716Metagenome197Y
F066235Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0114934_100844841F026716AGGAMSYCKRELYAVQTGDYAGQMFAVIEPSKDFVGCLSLPVMENVKVPKESFENGRNSDIIKFVEKLPKKIYSVVEAQYKANENPDNRRQQFNTPNISYSKIAVEKDGDSFE*
Ga0114934_100844842F066235N/AMEEDQDQFDSDDELREMVEKALKENIKERKSFKNRKDLAYRLSTIISEYLDSYILLGFDFNGRHIDIKAAKTPQQVEALNSFLLKYFANEAQSIKGINPPDELL*

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