NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114934_10133515

Scaffold Ga0114934_10133515


Overview

Basic Information
Taxon OID3300011013 Open in IMG/M
Scaffold IDGa0114934_10133515 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1183
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5275Long. (o)25.4914Alt. (m)Depth (m)482
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022751Metagenome213Y
F027653Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0114934_101335151F027653N/AIKKNSELKENDEFHQRTVKMSWLRNKDLTPIVPNIDVFVNWLMDIKEHKYFDKFNYYLFGGFISWPEKPTRDIDILISKRDGKYGTLEELELIMVDMFDLAYDIHGFFLDTFYMRKPQWIADFPRDENILRSVEQKGLWVTITKNKPVYSLKFRRYGKLNCCYRPSFTNWWDNDSDMINRWVNLNANYARIIDLRRIIKYYENNKERNMKDFLNEFQEYSGY*
Ga0114934_101335152F022751AGGAGMISFIIPFSTIEKDKFLNLNEKEDLWEENDSANIIFSTIKTIKNINSLKCEKEILLVDNSHTFPDVELPNVRVIKGWQALPLEELKEIPQFMNHRDIQLSLDNLGCLTMWVSMAFHLGTQEAKGEYVVLQHNDTFYHRDCIDEMIEQMETEDLQYISVDNKKIWISTY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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