NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138540_171409

Scaffold Ga0138540_171409


Overview

Basic Information
Taxon OID3300011051 Open in IMG/M
Scaffold IDGa0138540_171409 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 21 (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016550Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0138540_1714091F016550N/AMKKTMVRCLVLVFTVALAMAAVADDQEKATKEIKKITSISVDSNMRSVVNRSMAEMLKARRLDLVKERQDLNVNYGGLFLVHQLTAGGAKMEDIAAQLKAGKKIFDIANDDHANWKQINSDAKKLNKKIDDNIAKYFMDSKKLAALDQTDEYDAKADKVAADSDISKDEYADAQSRYQHLHDLASSQLPTGDANGINQGAG
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