NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151489_1731185

Scaffold Ga0151489_1731185


Overview

Basic Information
Taxon OID3300011106 Open in IMG/M
Scaffold IDGa0151489_1731185 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)980
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012935Metagenome / Metatranscriptome276Y
F052743Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0151489_17311851F052743GAGMATSHYLSLRQAVRPAILAHQLLAGDQERAGTLAAECEDLLYLTRELLKAAGRARILAVVPAPRMPDESGSDRQAQLLEAYADAGLLWTKVVGSSLALAGALIERGEWEDVRALAGLLAGAGEESAATELRIRLGGAVWDAHRDQLRAISNNMPPAAIEPAINALRAILREVP
Ga0151489_17311852F012935N/AAGMHRWHELLAEGDYGRPSETSARLVWLADKGPDAGIHVVAWADGYATAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLYAFAREGFLSTNGKRSPA*
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