Scaffold Ga0114947_10002538

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114947_10002538

Scaffold Ga0114947_10002538

Overview

Basic Information
Taxon OID	3300011112 Open in IMG/M
Scaffold ID	Ga0114947_10002538 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7243
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Pacific Ocean: Mariana Trench
Coordinates	Lat. (^o)	12.6311	Long. (^o)	144.7214	Alt. (m)		Depth (m)	6844
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001384	Metagenome / Metatranscriptome	709	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114947_100025387	F001384	N/A	MSIPALFFVDRRATFSLCLPFGKLLKSQRSGSEKEVSMADLRGVGKPITYSDDNPVSEWIDGFRKKLNSQKRKPKDDAERELLARWLGYRGREELECIVGTACYAYSHFEMDADWRYQLTDHIRTEAGHGWGYIQQGNAIFPARDQAKPDPDFIREHGLTPRVEHIQLMKRDFLSYLISGNLWPYGHCTAVSIQGIDISTPQVLDFEERVVHAEERGHHNAILQKLHDYIWELIEKEGEEPVRRRIAEIDAKALNSRCRTIFDPPRREFLRKTFNVPVENVKKFPEWREYLYLNVLGFPPEPVVIANWPEDVPQPKAA*

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