NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114947_10480657

Scaffold Ga0114947_10480657


Overview

Basic Information
Taxon OID3300011112 Open in IMG/M
Scaffold IDGa0114947_10480657 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)881
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NamePacific Ocean: Mariana Trench
CoordinatesLat. (o)12.6311Long. (o)144.7214Alt. (m)Depth (m)6844
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005288Metagenome / Metatranscriptome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0114947_104806571F005288N/AMGSNTALFVEDIAVDTFLSISFGTLLMHLFQGLFTARSWQSFTYLACGWALATDRHTITTYLWLSGASTAKHFSRFYAFLGCPLYRQRWHLWGAVIRLADQFVPEGEVIQVLFDDTTKKKAGSHIEGCDCYRSGAGSARQEYRTLWGLNFGMASKRIPLKPWPGYYQSVPVGLELYLKADQAHRLNVPYRSRSQLAHDILEFIALQLPTRQLRSLADG
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