NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1018

Scaffold Ga0151517_1018


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1018 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)94854
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (58.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012760Metagenome / Metatranscriptome277Y
F021985Metagenome / Metatranscriptome216Y
F040538Metagenome161Y
F043837Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0151517_101815F012760AGGAGMKIPELVYEIRNLARKEEDPLKKDLFYQCAKSLEILGNIAKIADLAVAEHNSAETPAINEDETIKWNIDDVTLKMLDEHIDALVHYGFMNKDDRWPYGDQPFTKFVSKYLKSQIVNDSSME*
Ga0151517_101817F040538AGGAMEITNVDRPTKIQRVFDYMRSGAPMTAGEARKRFRVQNMRATMHDLREAFDRFDLNYTISRTTRNGRSYYKIVRSR*
Ga0151517_10189F021985N/AMEGDSKKISHLYAILFREAKLILSNYEKYLQDKLTSKELAQKMLSLRDAIQRIEEANK*
Ga0151517_101899F043837GGAGMVKRIKSRYGDERIITSLKNGRYKIEGRTLYTRHGDGLFDFEGGPCYIVGDRLLDVKSNPIIEKIEIDQNVVDKDYAAVILHTRKAQ*
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