Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1020 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 88133 |
Total Scaffold Genes | 142 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (42.96%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F001190 | Metagenome / Metatranscriptome | 753 | Y |
F001806 | Metagenome / Metatranscriptome | 631 | Y |
F003687 | Metagenome / Metatranscriptome | 473 | Y |
F029405 | Metagenome / Metatranscriptome | 188 | Y |
F055681 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0151517_1020103 | F001806 | AGAAG | MDAGVRQKRVEALEKIKNRALNMAKEGRDSFEVRDFVTEAKKELAYELPDEDAFKKAVNVTKAYMSKKQK* |
Ga0151517_1020113 | F001190 | N/A | MTSSVPTGQTTADDYFDIAKFEQLLERLEGSKGRQKRQESLEGRRNIYAQGLASMMSNF* |
Ga0151517_102084 | F055681 | N/A | MIGFSIEFKRWYLVIRGPKGRVYSAFGFANQMPVFTPDKTMTLQEYMDDYDDAIVFTRNGEEIMRI* |
Ga0151517_102087 | F001120 | GGAG | MTKKSPINFDRTIAGFNLTEHGIKSYTKSFKLGPFQLTLNARKSGVLGSISIPGTGLSKRNIKLF* |
Ga0151517_102090 | F001165 | N/A | MTALNDAPKPRIPDAIDSQRLQAMSIVAKMKESADRHGIGFVGGFVDADGNKFVMTNMSDEDTNALIPGDLQ* |
Ga0151517_102093 | F029405 | N/A | MTTQPFDENYNADFLDAWADFAYQQEQAMRESEQSEWDGIDEISSAERNACDYYNERYVISNYD* |
Ga0151517_102095 | F003687 | GGA | MTPKAVERLLTQEARLLARRDNVIDQEIEQQRQAALEIFYKWQDGLTEFQDIVPFCVVLERKVRLNHALIKWEQEHLDD* |
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