Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1040 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 60129 |
Total Scaffold Genes | 107 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (54.21%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031405 | Metagenome / Metatranscriptome | 182 | Y |
F034546 | Metagenome / Metatranscriptome | 174 | Y |
F057945 | Metagenome | 135 | Y |
F062565 | Metagenome / Metatranscriptome | 130 | Y |
F064508 | Metagenome / Metatranscriptome | 128 | Y |
F082112 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0151517_10401 | F034546 | N/A | HGNYNMIKAQFTAADVAEATKGLGATVLKPRKAKQPVCRAKSSKGFVKGTGGFATGYPRKVFV* |
Ga0151517_104042 | F062565 | GGAG | MPKYIVEQLSIFRNVYVIEAESEEEAVKISEYADDNWQEWLGCVKVDINEYSDERIAYFKNKQYYWNGVTYKDKDGYLAYHHPSGEDVERKEILIK* |
Ga0151517_104065 | F031405 | N/A | MMIRIYSSSKKKKLTKKQLQEQQDFISSINKIPLPSGGRFPAAAPKKAKDKPLMPYRVKREVSHAPSLPDTHLGALTKTGIMKDYHKLSSSDREIVADVASCTAPMHKGNYVYVTPGINPAGLGRKNEVL* |
Ga0151517_104067 | F064508 | N/A | MNVGMTSMCPFFYEVKMSKFKAWLVDKYLQLENQAIQAITTANFYGNLFTERQKFYIIATFMALLAMAGAPGAVQFIGLVYIMGKMTPEDKDEN* |
Ga0151517_104073 | F082112 | GGAGG | MLSFKQHIQLDEGNPLARLAKHAEEGRHYAILSSQRPHDEVSSEQNKKNHEELKKKLSAQGYTHKEVEGHWEGGKEKSIMVHAKGKGEEHGKQLLHDIKKHGEHYNQDSILHHDGKTATLHGTNKTGHPGYGKSENVGKMAFNKPHALFQTETKPKSDKPLKPGRTSKGSARFTTV* |
Ga0151517_10409 | F057945 | N/A | MKEYDWERYSEKYYYYDTSTGKIVGAVSKIALQEVWIGLVYVGEYTFTVQDEKHLGQYINLESAKRAVQFFWDRESRTLLE* |
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