Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1107 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1107 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	35092
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (63.33%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

35092

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (63.33%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F007911	Metagenome / Metatranscriptome	342	N
F016963	Metagenome	243	N
F042872	Metagenome	157	Y
F043284	Metagenome	156	N
F044969	Metagenome	153	N
F057981	Metagenome	135	N
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_110711	F005502	AGGAG	VRSLLWIAAILGMTSGQAANVMIDMRPQPKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK*
Ga0151517_110712	F016963	GGAGG	VIEVLPEQSTHEQLLNRVRALARELAEAKAALAAAEGRENDLIDRIRSGL*
Ga0151517_110719	F072095	AGG	MIRDLEQEGVLSAPAASYGSGALSMTMALIDLQAKNKELRNRLERIEDIIKGLIEKQGVQS*
Ga0151517_110721	F042872	AGG	MTLPTIINQNVEGNRIGGSNPSTATNYHYNDLRQSSNTAVITEPKKPYYQQLNLNSRGGYDLTAEAFIYHPNPAVCRMWHAQHEASK*
Ga0151517_11073	F043284	AGG	MKLLSVINKLNETRDKAIELVGRTIALASDAGEIIAVARTEGKDVLALCEEAGITEEVGKRYEKVAATQKRLTNGDADPSLMRQTYLRIGILPDPITMSEPSEPKHFLFPIMKARQWLASRGLKFISQDKELRAQFLAEAEPIVNAYKEMTQ*
Ga0151517_110731	F006891	N/A	MSTDQVAELSERLSVVREAVARVETRQTVILDLLERSQASLGEYHGRLTNMEREAHTIKTKLWLVALISGAVVSTVWELIKRRFSF*
Ga0151517_110742	F044969	AGG	MSASLTVDASKLQKAMKAFIGNTKAEAAKEMRIQARMLCVSLANSTQPFGFGNDVKKVGEKAVTRDIDRVYKSAGTASKEIAKLSLPKGKTKTQNAEQMAKALAALVLGKTGGSKRKRAESAQQLLNRIRQQPYVGTQVGQFDGGKSHESARYGKSKRVPKNQFVRQIVTKDSPLSRYFKDKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVNDKSQTALGTFSKPYVQMTNTIPWINNVISAGTIQKSIDIQVLKMIKRLSIIANYESKKAGL*
Ga0151517_110744	F057981	N/A	MSEEALLQELDNSLISPDRFFKDQRLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKTIRLAWDKDVFREKLMDWIAEMTEDDRNTASVMCSAILAEANKARVNVIPSAIAAPPGNA*
Ga0151517_110747	F007911	AGAAG	MPAVTMLDRLIEAAFQELLTATVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVRGSGVFAVPVEIVVDDSYDDTTVDAHTQKCSKILQAFYDSSTLTARLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTFKLAVIAYPNSIAS*
Ga0151517_11077	F007747	GGAGG	MKHLGKITFGKSRPAPKQILVDVTYDAKTAKALHAFGLKQLKKDPEIVIEYVIVKALEAFAKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1107

Overview

Ecosystem & Geography

Associated Families

Sequences