NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1124

Scaffold Ga0151517_1124


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1124 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)33001
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (72.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003768Metagenome469Y
F022860Metagenome / Metatranscriptome212Y
F027495Metagenome194Y
F033780Metagenome176Y
F056573Metagenome137Y
F060870Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0151517_112412F022860AGGAMKKFLSYVTENSWTLAGTGMVLITLSGPTLKQALWITGVALVLHSVLTFTIGEDSE*
Ga0151517_112416F003768GGTGGMAHFAKIENGIVREVIVVGNGDAPTEAAGKAFIASIGLAGEWVQTSYNNNPVEGQDRGKYAGIGDVWNGSQFVSPVSEVVE*
Ga0151517_112427F027495AGGMKHQETHPTLDVEGCFACRISHVRMSGSAMPTRHNVAQLNMKERALDKDLDAYKRIRKTGGQPTKIDGSAKLEKIAD*
Ga0151517_112428F056573N/AMSTFRPPTDDFMVLGIPPKEFDSQEVRTAYNLFRHFDAEPRGRNVFLLTNGTYTENEPNDITTIRKVYWGGSDNEVTADEVASLTAAGYGAYIS*
Ga0151517_11246F033780AGGAMMISPCPWSLVAVHWIDAFDSPNGWINTKEYKAQPQHVVSVGWLWADLLEGYLSVTCSYCPNEDPEMDTVGMVTHIPVGMVQKVVVLGSPQFDA*
Ga0151517_11249F060870GAGGVDANAALIVAAAVTAVGGIVVAIIQQFRRENHTDHQVVVGLLQVLRKSQQRVEDKVDRVDERLDKHLEFHLDGGMLDNGRTIHQDGVEAISKIS*
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