Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1127 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1127 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	32623
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (50.00%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

32623

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (50.00%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010917	Metagenome	297	Y
F019968	Metagenome / Metatranscriptome	226	Y
F019996	Metagenome / Metatranscriptome	226	Y
F020539	Metagenome / Metatranscriptome	223	Y
F024771	Metagenome	204	N
F031868	Metagenome	181	N
F037125	Metagenome	168	Y
F050330	Metagenome	145	Y
F085365	Metagenome / Metatranscriptome	111	N
F091614	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_112714	F037125	N/A	MIDRKQRGSHDLEVTIYDLKKDIDLLKEDIQAKDIYIKKLEQELDKSIRSEN*
Ga0151517_112717	F019996	N/A	MSKCIFCKRPMINKLEQHIKACHKCIVDLLMKKHNLKVKKQAPISINTKKYGKV*
Ga0151517_112719	F010917	N/A	MNLDKITFGSRIINLNLIDKEQANKKHIFGEFDSDTNIITLDKSLDDIQMSNTIIHEVCHLIHDHFKIDLSAKAEELVCNSIANGICDILYQNQDLLEFLYKSLKKE*
Ga0151517_112721	F050330	N/A	MANETTSTSLNKLYTNKVKVKGTYRVYKPKPLKMPRKKK*
Ga0151517_112725	F006893	AGGA	MHNSTTENITESTKKILCDKKLYKDINFFEVPHNKVLLAVIRSITKKSFAQIGKDYKKSWFSIYASVKDTQKNGLKSFTNKVIELVREDLK*
Ga0151517_112729	F019968	N/A	LGLLWKENKMSKKEIGVICSMTYFEMKMMVAVLSRILLDNEIRGEHTKKRIFNLISKLNGMLTKQGFKNA*
Ga0151517_112735	F031868	AGGAG	MKTVKQEIEDLHNQSKKDRYFASTYAEYYYTLLDHSDLSLDEFYKLYPQYDLEKTDSLYWKQFMKQWKETWKPNTI*
Ga0151517_112736	F091614	GGA	METKHDIINRLASNLRYLRINTKIEQPMSCKIKYMSQKDLAQMMGIGCEQQISKFELGTNIMSSYQIYKVSKVFDVSVDSLFGDLTKSDYKKTIKYDIYA*
Ga0151517_112741	F024771	GAG	MNDKKYIENFNHESYENRTKNYLNISEDRFVQYCTSRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKSFPDYFVYAPKEAHKQEQFFVELKNATWEQSKTLAKIKVRDIKRYIYFEQSFTNYHTRFTICFPLADKIIFKSVDQILKLLPKSQLKCFPNDNIEYFEVQLN*
Ga0151517_112749	F020539	N/A	MARTTNEELISLRGHITGIKREVKILGTSLYKLEKKMENLYWSILCGLGALSLALITIFLAK*
Ga0151517_112750	F085365	N/A	MIYTTEKNNFYSKENSMLDYKSFKEFWSKFYADAFEDVKTFWKDYAKACEQFYSKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1127

Overview

Ecosystem & Geography

Associated Families

Sequences